CERR

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CERR Topics

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--BiorExtWiki 11:35, 7 November 2008 (CST)

Contents 1 Introduction 2 DICOM Import, which is DICOMJ 3 RTOG Import 4 CERR-Viewer 5 Dose Manipulation 6 Scan Manipulation 7 Structure Manipulation 8 IMRTP 9 Metrics 10 Code-modification log 11 Misc 12 Command Line functions 13 Merging Plans 14 Image Fusion 15 Batch Scripts for Import and DVH extraction for various outcomes analysis projects (Sandy; Divya) 16 General structure of planC 17 Quality Assurance

Introduction

• License and copyright
• System and Software Requirements
• Installation and quick start instructions
• The CERR directory structure

DICOM Import, which is DICOMJ

• General Description
• DICOMJ Getting Start
• Different Modalities (CT, MR, US, PET, SPECT) in DICOMJ Import
• Known limitations

RTOG Import

• General Description
• RTOG Import
• Description for Doses in Binary and ASCII format.
• Support for downsampling doses.
• Known limitations.

CERR-Viewer

• General Description
• How to's

Dose Manipulation

• Introduction
• Dose Management
• Add/Subtract/Reassign
• Dose - CT Profile

Scan Manipulation

• Introduction
• Scan Management
• Append Scan

Structure Manipulation

• Introduction
• Mesh Representation
• Contouring
• Deriving New Structures
• Reassigning Color

IMRTP

• GUI controls
• Data structure
• QIB simplified dose calculation engine
• Monte Carlo computed beamlets
• ORART Optimization example
• IMRT optimization interfacing with an external solver

Metrics

• Dose Volume Histograms (DVHs)
• Intensity Volume Histograms (IVHs)
• Plan metric comparisons
• Adding plan metrics
• Dose Projection images
• Dose-distance plots
• NTCP models
• Plan reporting tools

Code-modification log

• Description

Misc

• Anonymize plan
• Gamma knife import
  • Elekta Export Process
• PLUNC Import
• Crosslisting tool

Command Line functions

• SLICE POSITIONING
• STRUCTURES
• DOSE
• SCAN
• ROI
• OTHERS
• LIST

Merging Plans

• Merging two CERR plan archives

Image Fusion

• Image Registration
• Analysis
• Image Review Tools

Batch Scripts for Import and DVH extraction for various outcomes analysis projects (Sandy; Divya)

• Description - Program to extract DVH information

• Program to extract DVH information

• Description - PROGRAM TO WRITE TO EXCEL

• PROGRAM TO WRITE TO EXCEL

General structure of planC

planC Data-Structure

Quality Assurance

Test Procedure